Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | FAP39_12580 | Not Available | Negative | 2562118 - 2563401 | 45769.2 |
| branched-chain amino acid abc transporter permease | FAP39_12585 | Not Available | Negative | 2563484 - 2564560 | 39048.6 |
| hypothetical protein | FAP39_12590 | Not Available | Negative | 2564564 - 2564818 | 8886.87 |
| branched-chain amino acid abc transporter permease | FAP39_12595 | Not Available | Negative | 2564825 - 2565811 | 35317.5 |
| abc transporter atp-binding protein | FAP39_12600 | Not Available | Negative | 2565854 - 2566669 | 30059.3 |
| long-chain fatty acid--coa ligase | FAP39_12605 | Not Available | Negative | 2566666 - 2568636 | 73519.1 |
| response regulator | FAP39_12610 | Not Available | Positive | 2568832 - 2570748 | 70541.4 |
| response regulator transcription factor | FAP39_12615 | Not Available | Positive | 2570753 - 2571457 | 25873.0 |
| wgr domain-containing protein | FAP39_12620 | Not Available | Positive | 2571600 - 2571845 | 9485.63 |
| formate dehydrogenase subunit alpha | FAP39_12625 | Not Available | Negative | 2571933 - 2574710 | 101565.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
