Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent chaperone clpb | FAP39_12530 | Not Available | Negative | 2551235 - 2553850 | 95257.7 |
| hypothetical protein | FAP39_12535 | Not Available | Positive | 2554075 - 2554776 | 26520.6 |
| orotidine-5'-phosphate decarboxylase | FAP39_12540 | Not Available | Positive | 2554837 - 2555535 | 24264.3 |
| dna polymerase iv | FAP39_12545 | Not Available | Positive | 2555660 - 2556916 | 46346.3 |
| n-formylglutamate amidohydrolase | FAP39_12550 | Not Available | Negative | 2556920 - 2557777 | 31181.2 |
| Trna-val | Not Available | Not Available | Positive | 2557926 - 2558000 | Not Available |
| 50s ribosomal protein l36 | FAP39_12560 | Not Available | Positive | 2558073 - 2558198 | 4968.25 |
| hypothetical protein | FAP39_12565 | Not Available | Negative | 2558273 - 2559664 | 52456.0 |
| phenylacetate--coa ligase | FAP39_12570 | Not Available | Negative | 2559815 - 2561035 | 43016.3 |
| abc transporter atp-binding protein | FAP39_12575 | Not Available | Negative | 2561224 - 2562048 | 30548.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
