Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhodanese-like domain-containing protein | FAP39_12420 | Not Available | Positive | 2526230 - 2526622 | 13719.5 |
| hypothetical protein | FAP39_12425 | Not Available | Positive | 2526802 - 2527074 | 10257.0 |
| beta-ketoacyl-[acyl-carrier-protein] synthase family protein | FAP39_12430 | Not Available | Positive | 2527071 - 2528282 | 41907.3 |
| hypothetical protein | FAP39_12435 | Not Available | Positive | 2528279 - 2529076 | 28496.3 |
| duf3307 domain-containing protein | FAP39_12440 | Not Available | Negative | 2529086 - 2529466 | 14619.1 |
| cyclic nucleotide-binding domain-containing protein | FAP39_12445 | Not Available | Positive | 2529645 - 2532725 | 115088.0 |
| protein-methionine-sulfoxide reductase heme-binding subunit msrq | FAP39_12450 | Not Available | Negative | 2533232 - 2533909 | 25636.8 |
| hypothetical protein | FAP39_12455 | Not Available | Negative | 2533857 - 2534063 | 7431.96 |
| protein-methionine-sulfoxide reductase catalytic subunit msrp | FAP39_12460 | Not Available | Negative | 2534063 - 2534968 | 33689.3 |
| fmn-binding glutamate synthase family protein | FAP39_12465 | Not Available | Negative | 2535038 - 2536531 | 54473.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
