Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine dehydrogenase | FAP39_12320 | Not Available | Negative | 2506776 - 2508062 | 44949.2 |
| hypothetical protein | FAP39_12325 | Not Available | Negative | 2508172 - 2508414 | 8819.52 |
| tetr/acrr family transcriptional regulator | FAP39_12330 | Not Available | Positive | 2508517 - 2509104 | 22057.5 |
| pirin family protein | FAP39_12335 | Not Available | Negative | 2509235 - 2510146 | 33333.2 |
| long-chain fatty acid--coa ligase | FAP39_12340 | Not Available | Positive | 2510364 - 2511989 | 58469.1 |
| alpha/beta hydrolase | FAP39_12345 | Not Available | Positive | 2511982 - 2512869 | 32406.9 |
| nitronate monooxygenase | FAP39_12350 | Not Available | Positive | 2512981 - 2513970 | 34535.2 |
| histidine phosphatase family protein | FAP39_12355 | Not Available | Positive | 2513976 - 2514635 | 23926.4 |
| phosphotransferase family protein | FAP39_12360 | Not Available | Positive | 2514647 - 2515675 | 37772.9 |
| sdr family oxidoreductase | FAP39_12365 | Not Available | Positive | 2515665 - 2516450 | 27315.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
