Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pkd domain-containing protein | FAP39_12215 | Not Available | Negative | 2478571 - 2483445 | 171422.0 |
| hypothetical protein | FAP39_12220 | Not Available | Negative | 2483468 - 2485822 | 84016.9 |
| tetratricopeptide repeat protein | FAP39_12225 | Not Available | Negative | 2486044 - 2487981 | 71166.3 |
| crp/fnr family transcriptional regulator | FAP39_12230 | Not Available | Negative | 2488127 - 2488813 | 25574.1 |
| arylsulfatase | FAP39_12235 | Not Available | Positive | 2489006 - 2490598 | 60267.8 |
| haloacid dehalogenase-like hydrolase | FAP39_12240 | Not Available | Positive | 2490738 - 2491691 | 34882.2 |
| moxr family atpase | FAP39_12245 | Not Available | Positive | 2491714 - 2492697 | 35805.2 |
| duf58 domain-containing protein | FAP39_12250 | Not Available | Positive | 2492705 - 2493652 | 35074.4 |
| duf4381 domain-containing protein | FAP39_12255 | Not Available | Positive | 2493649 - 2494131 | 17742.6 |
| vwa domain-containing protein | FAP39_12260 | Not Available | Positive | 2494131 - 2495114 | 35810.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
