Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l18 | FAP39_12165 | Not Available | Positive | 2469212 - 2469571 | 12993.9 |
| 30s ribosomal protein s5 | FAP39_12170 | Not Available | Positive | 2469684 - 2470256 | 20650.1 |
| 50s ribosomal protein l30 | FAP39_12175 | Not Available | Positive | 2470269 - 2470454 | 6991.64 |
| na+/h+ antiporter subunit g | FAP39_12180 | Not Available | Negative | 2470579 - 2470947 | 13246.3 |
| k+/h+ antiporter subunit f | FAP39_12185 | Not Available | Negative | 2470955 - 2471224 | 9966.72 |
| na+/h+ antiporter subunit e | FAP39_12190 | Not Available | Negative | 2471221 - 2471718 | 18733.6 |
| monovalent cation/h+ antiporter subunit d | FAP39_12195 | Not Available | Negative | 2471715 - 2473259 | 54662.2 |
| na+/h+ antiporter subunit c | FAP39_12200 | Not Available | Negative | 2473256 - 2473606 | 12297.2 |
| monovalent cation/h+ antiporter subunit a | FAP39_12205 | Not Available | Negative | 2473608 - 2476469 | 102582.0 |
| hamp domain-containing protein | FAP39_12210 | Not Available | Negative | 2476841 - 2478571 | 62104.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
