Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_12115 | Not Available | Positive | 2464850 - 2465470 | 23307.4 |
| hypothetical protein | FAP39_12120 | Not Available | Positive | 2465492 - 2465905 | 16009.9 |
| 50s ribosomal protein l29 | FAP39_12125 | Not Available | Positive | 2466164 - 2466367 | 7507.88 |
| 30s ribosomal protein s17 | FAP39_12130 | Not Available | Positive | 2466379 - 2466609 | 8665.55 |
| 50s ribosomal protein l14 | FAP39_12135 | Not Available | Positive | 2466688 - 2467056 | 13442.6 |
| 50s ribosomal protein l24 | FAP39_12140 | Not Available | Positive | 2467058 - 2467369 | 10771.0 |
| 50s ribosomal protein l5 | FAP39_12145 | Not Available | Positive | 2467362 - 2467925 | 20765.4 |
| 30s ribosomal protein s14 | FAP39_12150 | Not Available | Positive | 2467943 - 2468248 | 11749.5 |
| 30s ribosomal protein s8 | FAP39_12155 | Not Available | Positive | 2468261 - 2468653 | 14029.0 |
| 50s ribosomal protein l6 | FAP39_12160 | Not Available | Positive | 2468664 - 2469200 | 19264.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
