Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l3 | FAP39_12065 | Not Available | Positive | 2458203 - 2458928 | 25188.3 |
| 50s ribosomal protein l4 | FAP39_12070 | Not Available | Positive | 2458925 - 2459542 | 22343.0 |
| 50s ribosomal protein l23 | FAP39_12075 | Not Available | Positive | 2459539 - 2459835 | 10699.0 |
| 50s ribosomal protein l2 | FAP39_12080 | Not Available | Positive | 2460652 - 2461494 | 30582.0 |
| 30s ribosomal protein s19 | FAP39_12085 | Not Available | Positive | 2461498 - 2461776 | 10536.7 |
| 50s ribosomal protein l22 | FAP39_12090 | Not Available | Positive | 2461780 - 2462160 | 14175.4 |
| 30s ribosomal protein s3 | FAP39_12095 | Not Available | Positive | 2462160 - 2462867 | 26525.3 |
| 50s ribosomal protein l16 | FAP39_12100 | Not Available | Positive | 2462881 - 2463294 | 15582.5 |
| hypothetical protein | FAP39_12105 | Not Available | Negative | 2463390 - 2464145 | 28520.2 |
| gnat family n-acetyltransferase | FAP39_12110 | Not Available | Positive | 2464267 - 2464797 | 19884.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
