Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_12015 | Not Available | Negative | 2450595 - 2451002 | 15986.9 |
| pyridoxal phosphate-dependent aminotransferase | FAP39_12020 | Not Available | Negative | 2451012 - 2452214 | 42802.2 |
| helix-turn-helix transcriptional regulator | FAP39_12025 | Not Available | Positive | 2452302 - 2452724 | 15730.8 |
| succinate dehydrogenase assembly factor 2 | FAP39_12030 | Not Available | Positive | 2452721 - 2452984 | 10046.0 |
| marr family transcriptional regulator | FAP39_12035 | Not Available | Positive | 2453075 - 2453572 | 19084.1 |
| lactoylglutathione lyase | FAP39_12040 | Not Available | Negative | 2453691 - 2454119 | 16182.0 |
| hypothetical protein | FAP39_12045 | Not Available | Negative | 2454200 - 2455597 | 50557.9 |
| hypothetical protein | FAP39_12050 | Not Available | Negative | 2456178 - 2456699 | 19292.6 |
| isocitrate lyase/phosphoenolpyruvate mutase family protein | FAP39_12055 | Not Available | Negative | 2456701 - 2457543 | 29752.9 |
| 30s ribosomal protein s10 | FAP39_12060 | Not Available | Positive | 2457879 - 2458187 | 11533.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
