Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal-phosphate dependent enzyme | FAP39_11960 | Not Available | Positive | 2438391 - 2439359 | 34276.2 |
| dsd1 family plp-dependent enzyme | FAP39_11965 | Not Available | Positive | 2439377 - 2440540 | 41887.9 |
| ornithine cyclodeaminase family protein | FAP39_11970 | Not Available | Positive | 2440610 - 2441575 | 33852.2 |
| phosphoglycolate phosphatase | FAP39_11980 | Not Available | Positive | 2442847 - 2443506 | 23855.7 |
| hypothetical protein | FAP39_11985 | Not Available | Positive | 2443651 - 2444223 | 20168.5 |
| hypothetical protein | FAP39_11990 | Not Available | Negative | 2444302 - 2444976 | 25467.4 |
| hypothetical protein | FAP39_11995 | Not Available | Negative | 2445024 - 2445641 | 23006.2 |
| dna topoisomerase iv subunit b | FAP39_12000 | Not Available | Negative | 2445699 - 2447657 | 72066.6 |
| polyphosphate kinase 2 | FAP39_12005 | Not Available | Positive | 2447953 - 2448921 | 36760.6 |
| mate family efflux transporter | FAP39_12010 | Not Available | Positive | 2449205 - 2450572 | 48155.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
