Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxyisourate hydrolase | FAP39_11910 | Not Available | Positive | 2425584 - 2425937 | 12994.3 |
| lysr family transcriptional regulator | FAP39_11915 | Not Available | Negative | 2425952 - 2426863 | 33715.8 |
| cysteine desulfurase | FAP39_11920 | Not Available | Positive | 2426972 - 2428204 | 45798.0 |
| xanthine dehydrogenase small subunit | FAP39_11925 | Not Available | Positive | 2428462 - 2429922 | 52440.5 |
| xanthine dehydrogenase molybdopterin binding subunit | FAP39_11930 | Not Available | Positive | 2429937 - 2432258 | 83742.1 |
| xanthine dehydrogenase accessory protein xdhc | FAP39_11935 | Not Available | Positive | 2432263 - 2433150 | 31240.9 |
| xanthine/uracil/vitamin c permease | FAP39_11940 | Not Available | Positive | 2433181 - 2434755 | 55221.4 |
| guanine deaminase | FAP39_11945 | Not Available | Positive | 2434839 - 2436131 | 47166.5 |
| iclr family transcriptional regulator | FAP39_11950 | Not Available | Negative | 2436175 - 2437002 | 29914.5 |
| aminotransferase class v-fold plp-dependent enzyme | FAP39_11955 | Not Available | Positive | 2437198 - 2438388 | 41705.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
