Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| magnesium transporter | FAP39_11860 | Not Available | Positive | 2411024 - 2412421 | 51028.4 |
| 5-formyltetrahydrofolate cyclo-ligase | FAP39_11865 | Not Available | Positive | 2412434 - 2412988 | 19767.8 |
| tigr00282 family metallophosphoesterase | FAP39_11870 | Not Available | Positive | 2413090 - 2413908 | 29392.4 |
| slc13 family permease | FAP39_11875 | Not Available | Positive | 2414118 - 2415896 | 63572.5 |
| dihydrolipoyl dehydrogenase | FAP39_11880 | Not Available | Negative | 2416025 - 2417758 | 59770.7 |
| branched-chain alpha-keto acid dehydrogenase subunit e2 | FAP39_11885 | Not Available | Negative | 2417770 - 2419041 | 44330.0 |
| pyruvate dehydrogenase (acetyl-transferring), homodimeric type | FAP39_11890 | Not Available | Negative | 2419065 - 2421722 | 99471.2 |
| purine permease | FAP39_11895 | Not Available | Negative | 2422073 - 2423479 | 48247.4 |
| ureidoglycolate lyase | FAP39_11900 | Not Available | Negative | 2423533 - 2424018 | 17756.2 |
| allantoinase puue | FAP39_11905 | Not Available | Negative | 2424015 - 2425430 | 52701.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
