Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | FAP39_11810 | Not Available | Positive | 2403970 - 2404749 | 27919.7 |
| coa-binding protein | FAP39_11815 | Not Available | Positive | 2404959 - 2405426 | 17012.7 |
| phosphoribosyl-atp diphosphatase | FAP39_11820 | Not Available | Negative | 2405469 - 2405786 | 11399.5 |
| imidazole glycerol phosphate synthase subunit hisf | FAP39_11825 | Not Available | Negative | 2405783 - 2406544 | 26358.6 |
| hypothetical protein | FAP39_11830 | Not Available | Negative | 2406548 - 2406820 | 9533.29 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | FAP39_11835 | Not Available | Negative | 2406845 - 2407567 | 25197.2 |
| duf2147 domain-containing protein | FAP39_11840 | Not Available | Positive | 2407726 - 2408124 | 13867.8 |
| imidazole glycerol phosphate synthase subunit hish | FAP39_11845 | Not Available | Negative | 2408225 - 2408863 | 22986.3 |
| imidazoleglycerol-phosphate dehydratase hisb | FAP39_11850 | Not Available | Negative | 2408865 - 2409452 | 21547.3 |
| guanine deaminase | FAP39_11855 | Not Available | Negative | 2409603 - 2410898 | 47134.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
