Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf541 domain-containing protein | FAP39_11765 | Not Available | Positive | 2395155 - 2395841 | 23805.9 |
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | FAP39_11770 | Not Available | Negative | 2395928 - 2397220 | 45759.9 |
| hypothetical protein | FAP39_11775 | Not Available | Negative | 2397370 - 2398374 | 38354.5 |
| hypothetical protein | FAP39_11780 | Not Available | Positive | 2398502 - 2398951 | 16429.4 |
| tetr/acrr family transcriptional regulator | FAP39_11785 | Not Available | Negative | 2398938 - 2399609 | 24316.1 |
| nad(p)/fad-dependent oxidoreductase | FAP39_11790 | Not Available | Positive | 2399718 - 2400992 | 47262.1 |
| bile acid:sodium symporter family protein | FAP39_11795 | Not Available | Positive | 2400989 - 2401891 | 31548.5 |
| sdr family oxidoreductase | FAP39_11800 | Not Available | Positive | 2401888 - 2402826 | 33578.6 |
| sdr family nad(p)-dependent oxidoreductase | FAP39_11805 | Not Available | Positive | 2402823 - 2403581 | 26855.2 |
| Trna-pseudo | Not Available | Not Available | Positive | 2403751 - 2403834 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
