Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | FAP39_11715 | Not Available | Positive | 2383127 - 2383693 | 20511.4 |
| disulfide oxidoreductase | FAP39_11720 | Not Available | Positive | 2383710 - 2386490 | 101937.0 |
| rna-binding s4 domain-containing protein | FAP39_11725 | Not Available | Positive | 2386494 - 2386880 | 14371.4 |
| ferredoxin family protein | FAP39_11730 | Not Available | Positive | 2386922 - 2387260 | 12756.9 |
| card family transcriptional regulator | FAP39_11735 | Not Available | Positive | 2387537 - 2388055 | 19203.9 |
| adenosylcobinamide-gdp ribazoletransferase | FAP39_11740 | Not Available | Negative | 2388160 - 2388915 | 26155.8 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | FAP39_11745 | Not Available | Positive | 2388998 - 2390008 | 34254.9 |
| potassium transporter | FAP39_11750 | Not Available | Negative | 2390081 - 2391952 | 67656.8 |
| lrp/asnc family transcriptional regulator | FAP39_11755 | Not Available | Negative | 2391977 - 2392432 | 16683.2 |
| hypothetical protein | FAP39_11760 | Not Available | Negative | 2392693 - 2394993 | 80842.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
