Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rlua family pseudouridine synthase | FAP39_11665 | Not Available | Positive | 2373812 - 2374852 | 37278.0 |
| alcohol dehydrogenase | FAP39_11670 | Not Available | Negative | 2375036 - 2376082 | 37152.5 |
| tetr family transcriptional regulator | FAP39_11675 | Not Available | Positive | 2376148 - 2376717 | 20731.5 |
| rna polymerase sigma factor rpoh | FAP39_11680 | Not Available | Positive | 2376976 - 2377872 | 33775.3 |
| dksa/trar family c4-type zinc finger protein | FAP39_11685 | Not Available | Positive | 2378000 - 2378269 | 9649.57 |
| trna (cytidine(34)-2'-o)-methyltransferase | FAP39_11690 | Not Available | Positive | 2378454 - 2378927 | 17662.1 |
| m3 family oligoendopeptidase | FAP39_11695 | Not Available | Negative | 2379004 - 2380824 | 68736.1 |
| fumarylacetoacetate hydrolase family protein | FAP39_11700 | Not Available | Positive | 2380951 - 2381787 | 29693.5 |
| alpha/beta hydrolase | FAP39_11705 | Not Available | Negative | 2381794 - 2382765 | 35907.8 |
| scp2 sterol-binding domain-containing protein | FAP39_11710 | Not Available | Negative | 2382766 - 2383056 | 9736.48 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
