Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rida family protein | FAP39_11605 | Not Available | Negative | 2360356 - 2360697 | 12483.9 |
| type i secretion system permease/atpase | FAP39_11610 | Not Available | Positive | 2360982 - 2362706 | 61513.0 |
| hlyd family type i secretion periplasmic adaptor subunit | FAP39_11615 | Not Available | Positive | 2362703 - 2363998 | 48392.5 |
| lytic murein transglycosylase | FAP39_11620 | Not Available | Negative | 2364039 - 2365184 | 40447.3 |
| crotonase/enoyl-coa hydratase family protein | FAP39_11625 | Not Available | Negative | 2365396 - 2366202 | 28970.7 |
| arac family transcriptional regulator | FAP39_11630 | Not Available | Positive | 2366457 - 2367491 | 39007.5 |
| hypothetical protein | FAP39_11635 | Not Available | Positive | 2368096 - 2369085 | 36822.4 |
| hypothetical protein | FAP39_11640 | Not Available | Positive | 2369082 - 2370380 | 46732.8 |
| hypothetical protein | FAP39_11650 | Not Available | Positive | 2371042 - 2371224 | 6293.59 |
| hypothetical protein | FAP39_11660 | Not Available | Negative | 2373520 - 2373813 | 10497.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
