Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | FAP39_11555 | Not Available | Negative | 2348936 - 2350297 | 47988.1 |
| hypothetical protein | FAP39_11560 | Not Available | Positive | 2350398 - 2350754 | 12944.9 |
| abc transporter substrate-binding protein | FAP39_11565 | Not Available | Positive | 2350796 - 2352340 | 56589.0 |
| abc transporter permease | FAP39_11570 | Not Available | Positive | 2352401 - 2353507 | 38897.4 |
| abc transporter permease subunit | FAP39_11575 | Not Available | Positive | 2353317 - 2354030 | 25098.5 |
| abc transporter atp-binding protein | FAP39_11580 | Not Available | Positive | 2354024 - 2354791 | 26820.7 |
| abc transporter atp-binding protein | FAP39_11585 | Not Available | Positive | 2354785 - 2355507 | 25822.4 |
| luxr family transcriptional regulator | FAP39_11590 | Not Available | Negative | 2356173 - 2356913 | 27990.6 |
| vwa domain-containing protein | FAP39_11595 | Not Available | Positive | 2357088 - 2359406 | 82341.2 |
| hypothetical protein | FAP39_11600 | Not Available | Positive | 2359406 - 2360302 | 32131.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
