Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna epoxyqueuosine(34) reductase queg | FAP39_11505 | Not Available | Negative | 2336256 - 2337320 | 39089.5 |
| glutathione s-transferase family protein | FAP39_11510 | Not Available | Negative | 2337351 - 2338016 | 25735.8 |
| monofunctional biosynthetic peptidoglycan transglycosylase | FAP39_11515 | Not Available | Negative | 2338075 - 2338797 | 26937.7 |
| glutamate synthase large subunit | FAP39_11520 | Not Available | Negative | 2338943 - 2343481 | 164116.0 |
| hypothetical protein | FAP39_11525 | Not Available | Negative | 2343572 - 2344237 | 23797.3 |
| gfa family protein | FAP39_11530 | Not Available | Negative | 2344234 - 2344683 | 16351.1 |
| nad(p)-dependent oxidoreductase | FAP39_11535 | Not Available | Negative | 2344770 - 2346203 | 51617.0 |
| undecaprenyl-diphosphate phosphatase | FAP39_11540 | Not Available | Positive | 2346423 - 2347226 | 28385.4 |
| complex i ndufa9 subunit family protein | FAP39_11545 | Not Available | Negative | 2347294 - 2348274 | 34865.3 |
| Trna-leu | Not Available | Not Available | Positive | 2348466 - 2348552 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
