Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-2 | FAP39_11455 | Not Available | Negative | 2318419 - 2320917 | 89248.0 |
| rna-binding protein | FAP39_11460 | Not Available | Negative | 2320914 - 2321546 | 22412.2 |
| transcription termination/antitermination protein nusa | FAP39_11465 | Not Available | Negative | 2321570 - 2323192 | 60440.2 |
| ribosome maturation factor rimp | FAP39_11470 | Not Available | Negative | 2323193 - 2323765 | 21080.1 |
| efflux rnd transporter periplasmic adaptor subunit | FAP39_11475 | Not Available | Positive | 2324096 - 2325238 | 40863.4 |
| efflux rnd transporter permease subunit | FAP39_11480 | Not Available | Positive | 2325242 - 2328376 | 110526.0 |
| 5-oxoprolinase | FAP39_11485 | Not Available | Negative | 2328457 - 2332059 | 128173.0 |
| hupe/urej family protein | FAP39_11490 | Not Available | Negative | 2332188 - 2333201 | 36138.4 |
| peptidyl-prolyl cis-trans isomerase | FAP39_11495 | Not Available | Negative | 2333198 - 2334043 | 31551.8 |
| hydantoinase/oxoprolinase family protein | FAP39_11500 | Not Available | Negative | 2334205 - 2336211 | 70680.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
