Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molecular chaperone dnak | FAP39_11405 | Not Available | Positive | 2304997 - 2306907 | 68768.3 |
| molecular chaperone dnaj | FAP39_11410 | Not Available | Positive | 2306988 - 2308127 | 40659.9 |
| amino acid abc transporter substrate-binding protein | FAP39_11415 | Not Available | Negative | 2308208 - 2309047 | 29739.7 |
| jab domain-containing protein | FAP39_11420 | Not Available | Positive | 2309200 - 2309961 | 28335.1 |
| cell envelope biogenesis protein ompa | FAP39_11425 | Not Available | Negative | 2309958 - 2311520 | 56360.0 |
| translocase | FAP39_11430 | Not Available | Negative | 2311538 - 2312566 | 36382.6 |
| preprotein translocase subunit seca | FAP39_11435 | Not Available | Negative | 2312663 - 2315356 | 100454.0 |
| peptidylprolyl isomerase | FAP39_11440 | Not Available | Positive | 2315529 - 2316395 | 30571.1 |
| bifunctional glutamate n-acetyltransferase/amino-acid acetyltransferase argj | FAP39_11445 | Not Available | Positive | 2316400 - 2317629 | 42712.6 |
| 8-oxo-dgtp diphosphatase mutt | FAP39_11450 | Not Available | Positive | 2317626 - 2318027 | 14911.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
