Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | FAP39_11350 | Not Available | Positive | 2291938 - 2292414 | 17170.3 |
| aminoglycoside phosphotransferase | FAP39_11355 | Not Available | Positive | 2292407 - 2293429 | 38342.8 |
| nucleotidyltransferase family protein | FAP39_11360 | Not Available | Positive | 2293405 - 2294097 | 24429.3 |
| double-strand break repair helicase adda | FAP39_11370 | Not Available | Positive | 2296958 - 2300365 | 125523.0 |
| thioredoxin | FAP39_11375 | Not Available | Positive | 2300402 - 2300722 | 11147.2 |
| hypothetical protein | FAP39_11380 | Not Available | Positive | 2300816 - 2301166 | 12888.5 |
| hypothetical protein | FAP39_11385 | Not Available | Positive | 2301163 - 2301534 | 13008.5 |
| atp-dependent protease subunit hslv | FAP39_11390 | Not Available | Negative | 2301591 - 2302148 | 19385.2 |
| duf1127 domain-containing protein | FAP39_11395 | Not Available | Positive | 2302341 - 2302529 | 6818.19 |
| polysaccharide biosynthesis protein | FAP39_11400 | Not Available | Positive | 2302780 - 2304672 | 68760.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
