Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-octaprenyl-6-methoxyphenyl hydroxylase | FAP39_11250 | Not Available | Positive | 2274007 - 2275221 | 43966.7 |
| trm112 family protein | FAP39_11255 | Not Available | Negative | 2275256 - 2275444 | 6863.37 |
| atp-dependent protease | FAP39_11260 | Not Available | Negative | 2275441 - 2276091 | 24412.3 |
| thioredoxin | FAP39_11265 | Not Available | Negative | 2276119 - 2277036 | 31955.7 |
| exodeoxyribonuclease iii | FAP39_11270 | Not Available | Negative | 2277090 - 2277878 | 29394.6 |
| glutathione s-transferase family protein | FAP39_11275 | Not Available | Positive | 2278075 - 2278704 | 23449.4 |
| response regulator transcription factor | FAP39_11280 | Not Available | Negative | 2278932 - 2279618 | 25838.1 |
| gtp cyclohydrolase ii | FAP39_11285 | Not Available | Positive | 2279782 - 2280873 | 39477.9 |
| hypothetical protein | FAP39_11290 | Not Available | Positive | 2280870 - 2281364 | 18628.4 |
| yggs family pyridoxal phosphate-dependent enzyme | FAP39_11295 | Not Available | Negative | 2281381 - 2282034 | 23343.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
