Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | FAP39_11200 | Not Available | Positive | 2263225 - 2263677 | 16236.3 |
| gamma-glutamyltransferase family protein | FAP39_11205 | Not Available | Positive | 2263711 - 2265288 | 55514.9 |
| rhodanese-like domain-containing protein | FAP39_11210 | Not Available | Positive | 2265284 - 2265679 | 14169.1 |
| heat shock protein hspq | FAP39_11215 | Not Available | Negative | 2265690 - 2266016 | 12701.7 |
| aec family transporter | FAP39_11220 | Not Available | Positive | 2266100 - 2266981 | 31100.2 |
| lytic transglycosylase | FAP39_11225 | Not Available | Positive | 2267057 - 2267644 | 22653.9 |
| outer membrane lipoprotein carrier protein lola | FAP39_11230 | Not Available | Negative | 2267676 - 2268269 | 21652.0 |
| dna translocase ftsk | FAP39_11235 | Not Available | Negative | 2268336 - 2271242 | 104101.0 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | FAP39_11240 | Not Available | Negative | 2271252 - 2272436 | 43111.3 |
| amidase | FAP39_11245 | Not Available | Negative | 2272600 - 2273802 | 42155.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
