Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine dehydrogenase | FAP39_11150 | Not Available | Positive | 2251642 - 2252760 | 38683.7 |
| fad-dependent oxidoreductase | FAP39_11155 | Not Available | Negative | 2252834 - 2255284 | 89385.4 |
| helix-turn-helix domain-containing protein | FAP39_11160 | Not Available | Negative | 2255377 - 2256375 | 36407.1 |
| homocysteine s-methyltransferase family protein | FAP39_11165 | Not Available | Negative | 2256378 - 2257280 | 32133.2 |
| fad-dependent oxidoreductase | FAP39_11170 | Not Available | Negative | 2257365 - 2259812 | 90657.7 |
| gfa family protein | FAP39_11175 | Not Available | Negative | 2259826 - 2260251 | 15317.1 |
| helix-turn-helix domain-containing protein | FAP39_11180 | Not Available | Negative | 2260205 - 2260777 | 21137.1 |
| gaf domain-containing protein | FAP39_11185 | Not Available | Negative | 2260945 - 2261403 | 16291.2 |
| acetyl-coa c-acyltransferase | FAP39_11190 | Not Available | Negative | 2261485 - 2262657 | 40434.3 |
| stas domain-containing protein | FAP39_11195 | Not Available | Positive | 2262854 - 2263183 | 12221.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
