Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_11100 | Not Available | Negative | 2240682 - 2240948 | 9971.35 |
| hypothetical protein | FAP39_11105 | Not Available | Negative | 2240953 - 2242287 | 49901.2 |
| hypothetical protein | FAP39_11110 | Not Available | Negative | 2242284 - 2243318 | 39118.7 |
| atp-binding protein | FAP39_11115 | Not Available | Negative | 2243318 - 2245249 | 70612.9 |
| hypothetical protein | FAP39_11120 | Not Available | Negative | 2245317 - 2246438 | 42620.4 |
| hypothetical protein | FAP39_11125 | Not Available | Negative | 2246465 - 2247547 | 40475.8 |
| ion transporter | FAP39_11130 | Not Available | Positive | 2247651 - 2248532 | 32839.9 |
| m24 family metallopeptidase | FAP39_11135 | Not Available | Negative | 2248621 - 2249829 | 44604.5 |
| p1 family peptidase | FAP39_11140 | Not Available | Positive | 2250052 - 2251032 | 32923.1 |
| lrp/asnc family transcriptional regulator | FAP39_11145 | Not Available | Negative | 2251044 - 2251502 | 17094.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
