Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| taurine abc transporter substrate-binding protein | FAP39_11050 | Not Available | Negative | 2227200 - 2228198 | 34224.8 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | FAP39_11055 | Not Available | Positive | 2228610 - 2230010 | 51094.0 |
| plp-dependent aminotransferase family protein | FAP39_11060 | Not Available | Positive | 2230173 - 2231636 | 54623.3 |
| sulfoacetaldehyde acetyltransferase | FAP39_11065 | Not Available | Positive | 2231737 - 2233512 | 63266.6 |
| acetate/propionate family kinase | FAP39_11070 | Not Available | Positive | 2233517 - 2234686 | 41170.3 |
| formate dehydrogenase | FAP39_11075 | Not Available | Positive | 2234811 - 2237618 | 103897.0 |
| 4fe-4s dicluster domain-containing protein | FAP39_11080 | Not Available | Positive | 2237615 - 2238388 | 28372.5 |
| dibenzothiophene desulfurase | FAP39_11085 | Not Available | Positive | 2238388 - 2239260 | 31422.1 |
| hypothetical protein | FAP39_11090 | Not Available | Negative | 2239262 - 2239984 | 26048.0 |
| duf1523 family protein | FAP39_11095 | Not Available | Negative | 2240012 - 2240671 | 25629.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
