Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3095 domain-containing protein | FAP39_11000 | Not Available | Positive | 2218164 - 2219267 | 39979.8 |
| hypothetical protein | FAP39_11005 | Not Available | Negative | 2219240 - 2219554 | 11225.4 |
| tetr family transcriptional regulator | FAP39_11010 | Not Available | Negative | 2219836 - 2220513 | 25615.5 |
| hemolysin | FAP39_11015 | Not Available | Positive | 2220856 - 2221497 | 23568.0 |
| peroxidase | FAP39_11020 | Not Available | Positive | 2221704 - 2221928 | 8429.76 |
| aspartate/tyrosine/aromatic aminotransferase | FAP39_11025 | Not Available | Negative | 2222196 - 2223380 | 42873.0 |
| 3-mercaptopyruvate sulfurtransferase | FAP39_11030 | Not Available | Negative | 2223380 - 2224234 | 31452.4 |
| ssra-binding protein smpb | FAP39_11035 | Not Available | Negative | 2224325 - 2224801 | 18337.0 |
| abc transporter permease | FAP39_11040 | Not Available | Negative | 2224983 - 2226293 | 47798.6 |
| abc transporter atp-binding protein | FAP39_11045 | Not Available | Negative | 2226299 - 2227105 | 29611.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
