Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | FAP39_10950 | Not Available | Positive | 2204604 - 2205494 | 33402.1 |
| putative 2-aminoethylphosphonate abc transporter permease subunit | FAP39_10955 | Not Available | Negative | 2205533 - 2207554 | 73781.6 |
| putative 2-aminoethylphosphonate abc transporter atp-binding protein | FAP39_10960 | Not Available | Negative | 2207554 - 2208663 | 40682.9 |
| putative 2-aminoethylphosphonate abc transporter substrate-binding protein | FAP39_10965 | Not Available | Negative | 2208798 - 2209814 | 36227.8 |
| helix-turn-helix domain-containing protein | FAP39_10970 | Not Available | Negative | 2209955 - 2211007 | 38427.1 |
| fad-dependent oxidoreductase | FAP39_10975 | Not Available | Negative | 2211044 - 2213506 | 89552.0 |
| deor/glpr transcriptional regulator | FAP39_10980 | Not Available | Negative | 2213594 - 2214412 | 29505.7 |
| na/pi cotransporter family protein | FAP39_10985 | Not Available | Negative | 2214549 - 2216231 | 61265.6 |
| inositol monophosphatase | FAP39_10990 | Not Available | Negative | 2216233 - 2217021 | 28318.7 |
| deor/glpr transcriptional regulator | FAP39_10995 | Not Available | Negative | 2217018 - 2217809 | 28634.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
