Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1295 domain-containing protein | FAP39_10900 | Not Available | Negative | 2193661 - 2194341 | 25015.0 |
| duf2269 family protein | FAP39_10905 | Not Available | Negative | 2194377 - 2194847 | 16830.6 |
| tetr/acrr family transcriptional regulator | FAP39_10910 | Not Available | Positive | 2194947 - 2195423 | 17604.9 |
| iron-containing alcohol dehydrogenase | FAP39_10915 | Not Available | Negative | 2195560 - 2196705 | 40234.2 |
| glutamine synthetase | FAP39_10920 | Not Available | Negative | 2196806 - 2198170 | 50712.9 |
| hypothetical protein | FAP39_10925 | Not Available | Negative | 2198300 - 2199139 | 28934.7 |
| aspartate aminotransferase family protein | FAP39_10930 | Not Available | Negative | 2199136 - 2200491 | 48272.9 |
| phosphonoacetaldehyde dehydrogenase | FAP39_10935 | Not Available | Negative | 2200570 - 2202018 | 52888.4 |
| phosphonoacetate hydrolase | FAP39_10940 | Not Available | Negative | 2202032 - 2203276 | 45388.9 |
| 2-aminoethylphosphonate--pyruvate transaminase | FAP39_10945 | Not Available | Negative | 2203298 - 2204485 | 43160.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
