Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase | FAP39_10845 | Not Available | Negative | 2181946 - 2183130 | 42759.9 |
| spor domain-containing protein | FAP39_10850 | Not Available | Negative | 2183136 - 2183993 | 30246.8 |
| Trna-ser | Not Available | Not Available | Positive | 2184189 - 2184278 | Not Available |
| hypothetical protein | FAP39_10860 | Not Available | Negative | 2184314 - 2185258 | 36157.4 |
| glycosyltransferase family 2 protein | FAP39_10865 | Not Available | Negative | 2185258 - 2187087 | 67136.8 |
| hypothetical protein | FAP39_10870 | Not Available | Negative | 2187084 - 2188652 | 56899.9 |
| nad-dependent epimerase/dehydratase family protein | FAP39_10875 | Not Available | Negative | 2188722 - 2189942 | 45472.4 |
| response regulator transcription factor | FAP39_10880 | Not Available | Negative | 2190173 - 2190778 | 21619.4 |
| n-acyl homoserine lactone synthase | FAP39_10890 | Not Available | Negative | 2192055 - 2193146 | 38681.0 |
| helix-turn-helix transcriptional regulator | FAP39_10895 | Not Available | Positive | 2193233 - 2193580 | 13014.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
