Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta fold hydrolase | FAP39_10795 | Not Available | Negative | 2174288 - 2175097 | 28350.5 |
| amino acid synthesis family protein | FAP39_10800 | Not Available | Negative | 2175069 - 2175671 | 21196.4 |
| gntr family transcriptional regulator | FAP39_10805 | Not Available | Positive | 2175775 - 2176467 | 25523.7 |
| 4-carboxymuconolactone decarboxylase | FAP39_10810 | Not Available | Positive | 2176515 - 2176892 | 13925.8 |
| dsba family oxidoreductase | FAP39_10815 | Not Available | Negative | 2176923 - 2177573 | 24075.3 |
| aec family transporter | FAP39_10820 | Not Available | Negative | 2177646 - 2178575 | 33365.3 |
| mbl fold metallo-hydrolase | FAP39_10825 | Not Available | Negative | 2178597 - 2179397 | 29610.2 |
| tatd family deoxyribonuclease | FAP39_10830 | Not Available | Negative | 2179394 - 2180200 | 29328.6 |
| dna polymerase iii subunit delta' | FAP39_10835 | Not Available | Negative | 2180205 - 2181326 | 40261.4 |
| dtmp kinase | FAP39_10840 | Not Available | Negative | 2181323 - 2181949 | 23002.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
