Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ethd family reductase | FAP39_10745 | Not Available | Negative | 2165525 - 2165833 | 10874.0 |
| hypothetical protein | FAP39_10750 | Not Available | Positive | 2165900 - 2166568 | 25715.4 |
| duf2244 domain-containing protein | FAP39_10755 | Not Available | Negative | 2166565 - 2167053 | 18398.5 |
| cytochrome c oxidase subunit i | FAP39_10760 | Not Available | Negative | 2167217 - 2168887 | 62254.3 |
| c-type cytochrome | FAP39_10765 | Not Available | Negative | 2169212 - 2169664 | 15403.4 |
| lipoyl(octanoyl) transferase lipb | FAP39_10770 | Not Available | Negative | 2169838 - 2170491 | 24378.9 |
| Trna-leu | Not Available | Not Available | Positive | 2170646 - 2170732 | Not Available |
| aldehyde dehydrogenase | FAP39_10780 | Not Available | Negative | 2170848 - 2172311 | 52114.0 |
| llm class flavin-dependent oxidoreductase | FAP39_10785 | Not Available | Negative | 2172333 - 2173370 | 39362.9 |
| flavin reductase family protein | FAP39_10790 | Not Available | Negative | 2173374 - 2174291 | 32499.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
