Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gly | Not Available | Not Available | Positive | 2151769 - 2151843 | Not Available |
| hypothetical protein | FAP39_10700 | Not Available | Positive | 2151969 - 2152340 | 12798.5 |
| glycosyltransferase family 2 protein | FAP39_10705 | Not Available | Positive | 2152711 - 2153565 | 32278.4 |
| glycosyltransferase family 2 protein | FAP39_10710 | Not Available | Positive | 2153570 - 2154406 | 32329.6 |
| pyruvate carboxylase | FAP39_10715 | Not Available | Negative | 2154445 - 2157888 | 125810.0 |
| alpha-hydroxy-acid oxidizing protein | FAP39_10720 | Not Available | Negative | 2158064 - 2159194 | 41246.9 |
| dna helicase ii | FAP39_10725 | Not Available | Positive | 2159298 - 2161844 | 94446.5 |
| sh3 domain-containing protein | FAP39_10730 | Not Available | Negative | 2161851 - 2163320 | 54047.6 |
| duf1127 domain-containing protein | FAP39_10735 | Not Available | Negative | 2163934 - 2164140 | 7642.2 |
| mrp/nbp35 family atp-binding protein | FAP39_10740 | Not Available | Positive | 2164395 - 2165468 | 37187.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
