Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l33 | FAP39_10645 | Not Available | Positive | 2144489 - 2144656 | 6380.96 |
| gnat family n-acetyltransferase | FAP39_10650 | Not Available | Positive | 2144769 - 2145284 | 18492.3 |
| bax inhibitor-1/ycca family protein | FAP39_10655 | Not Available | Negative | 2145370 - 2146107 | 26423.9 |
| duf1127 domain-containing protein | FAP39_10660 | Not Available | Negative | 2146219 - 2146428 | 7686.35 |
| lysr family transcriptional regulator | FAP39_10665 | Not Available | Positive | 2146556 - 2147461 | 32790.7 |
| nadph:quinone oxidoreductase family protein | FAP39_10670 | Not Available | Negative | 2147528 - 2148490 | 33611.8 |
| helix-turn-helix transcriptional regulator | FAP39_10675 | Not Available | Positive | 2148784 - 2149164 | 14348.0 |
| histidinol-phosphatase | FAP39_10680 | Not Available | Positive | 2149220 - 2150014 | 28135.3 |
| 8-oxoguanine deaminase | FAP39_10685 | Not Available | Positive | 2150132 - 2151466 | 47645.7 |
| Trna-gly | Not Available | Not Available | Positive | 2151542 - 2151616 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
