Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2927 domain-containing protein | FAP39_10590 | Not Available | Negative | 2134980 - 2135903 | 33405.9 |
| toxic anion resistance protein | FAP39_10595 | Not Available | Negative | 2135913 - 2137112 | 43737.6 |
| hypothetical protein | FAP39_10600 | Not Available | Negative | 2137130 - 2138023 | 32457.8 |
| rrna pseudouridine synthase | FAP39_10605 | Not Available | Negative | 2138269 - 2139051 | 29252.4 |
| nucleoside deaminase | FAP39_10610 | Not Available | Positive | 2139114 - 2139566 | 16019.1 |
| metal-dependent hydrolase | FAP39_10615 | Not Available | Negative | 2139647 - 2140339 | 25211.3 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatc | FAP39_10620 | Not Available | Positive | 2140577 - 2140864 | 10565.6 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gata | FAP39_10625 | Not Available | Positive | 2140864 - 2142351 | 52302.0 |
| hypothetical protein | FAP39_10630 | Not Available | Positive | 2142386 - 2143198 | 27182.9 |
| n-acetylmuramoyl-l-alanine amidase | FAP39_10635 | Not Available | Positive | 2143213 - 2143866 | 24266.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
