Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | FAP39_10490 | Not Available | Negative | 2110215 - 2111048 | 29639.4 |
| elongation factor p | FAP39_10495 | Not Available | Negative | 2111158 - 2111478 | 11510.4 |
| elongation factor p | FAP39_10500 | Not Available | Positive | 2111695 - 2112258 | 20907.0 |
| folate-binding protein ygfz | FAP39_10505 | Not Available | Negative | 2112435 - 2113175 | 26886.1 |
| glycosyltransferase | FAP39_10510 | Not Available | Positive | 2113245 - 2113922 | 24427.4 |
| abc transporter atp-binding protein | FAP39_10515 | Not Available | Negative | 2113932 - 2115704 | 64250.1 |
| pyridoxal phosphate-dependent aminotransferase | FAP39_10520 | Not Available | Negative | 2116264 - 2117367 | 39181.6 |
| crotonase/enoyl-coa hydratase family protein | FAP39_10525 | Not Available | Positive | 2117491 - 2118291 | 28574.9 |
| valine--trna ligase | FAP39_10530 | Not Available | Negative | 2118365 - 2121544 | 118361.0 |
| asnc family transcriptional regulator | FAP39_10535 | Not Available | Negative | 2121709 - 2122146 | 15734.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
