Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | FAP39_10440 | Not Available | Negative | 2103925 - 2104137 | 7964.56 |
| hypothetical protein | FAP39_10445 | Not Available | Positive | 2104296 - 2104937 | 23836.2 |
| arc family dna-binding protein | FAP39_10450 | Not Available | Negative | 2104940 - 2105254 | 11857.2 |
| arc family dna-binding protein | FAP39_10455 | Not Available | Positive | 2105339 - 2105533 | 7285.7 |
| hypothetical protein | FAP39_10460 | Not Available | Positive | 2105558 - 2105749 | 6870.11 |
| integrase | FAP39_10465 | Not Available | Positive | 2105746 - 2106777 | 40008.1 |
| Trna-cys | Not Available | Not Available | Positive | 2106846 - 2106919 | Not Available |
| protein-l-isoaspartate o-methyltransferase | FAP39_10475 | Not Available | Positive | 2107059 - 2107712 | 23529.2 |
| transporter | FAP39_10480 | Not Available | Positive | 2107757 - 2109175 | 50675.3 |
| hypothetical protein | FAP39_10485 | Not Available | Positive | 2109249 - 2110214 | 34526.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
