Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rida family protein | FAP39_10390 | Not Available | Negative | 2096249 - 2096605 | 12824.2 |
| abc transporter permease | FAP39_10395 | Not Available | Negative | 2096620 - 2097378 | 28724.2 |
| abc transporter permease | FAP39_10400 | Not Available | Negative | 2097378 - 2098070 | 25049.1 |
| transporter substrate-binding domain-containing protein | FAP39_10405 | Not Available | Negative | 2098130 - 2098906 | 27898.9 |
| atp-binding cassette domain-containing protein | FAP39_10410 | Not Available | Negative | 2098929 - 2099699 | 28295.0 |
| fad-dependent oxidoreductase | FAP39_10415 | Not Available | Negative | 2099702 - 2101075 | 47577.7 |
| (2fe-2s)-binding protein | FAP39_10420 | Not Available | Negative | 2101068 - 2101385 | 11358.7 |
| fad-binding oxidoreductase | FAP39_10425 | Not Available | Negative | 2101351 - 2102472 | 39223.0 |
| lysr family transcriptional regulator | FAP39_10430 | Not Available | Positive | 2102566 - 2103474 | 32840.7 |
| hypothetical protein | FAP39_10435 | Not Available | Negative | 2103722 - 2103922 | 7133.28 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
