Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylenetetrahydrofolate--trna-(uracil(54)- c(5))-methyltransferase (fadh(2)-oxidizing) trmfo | FAP39_10335 | Not Available | Negative | 2087646 - 2088995 | 48992.3 |
| enoyl-coa hydratase | FAP39_10340 | Not Available | Negative | 2089584 - 2090369 | 27956.7 |
| paai family thioesterase | FAP39_10345 | Not Available | Positive | 2090426 - 2090845 | 15025.3 |
| c4-dicarboxylate abc transporter | FAP39_10350 | Not Available | Positive | 2090970 - 2091929 | 34226.1 |
| 50s ribosomal protein l13 | FAP39_10355 | Not Available | Positive | 2092126 - 2092587 | 17012.6 |
| 30s ribosomal protein s9 | FAP39_10360 | Not Available | Positive | 2092591 - 2093076 | 17396.0 |
| giy-yig nuclease family protein | FAP39_10365 | Not Available | Positive | 2093238 - 2093468 | 8586.15 |
| hypothetical protein | FAP39_10375 | Not Available | Positive | 2093781 - 2094065 | 10666.5 |
| ornithine cyclodeaminase | FAP39_10380 | Not Available | Negative | 2094250 - 2095317 | 39039.5 |
| arginase | FAP39_10385 | Not Available | Negative | 2095326 - 2096252 | 33112.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
