Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid-a-disaccharide synthase | FAP39_10285 | Not Available | Positive | 2077038 - 2078192 | 41377.6 |
| hypothetical protein | FAP39_10290 | Not Available | Positive | 2078192 - 2078773 | 19615.4 |
| trna 2-thiouridine(34) synthase mnma | FAP39_10295 | Not Available | Negative | 2078798 - 2079943 | 41520.3 |
| duf1153 domain-containing protein | FAP39_10300 | Not Available | Positive | 2080064 - 2080342 | 10331.5 |
| response regulator transcription factor | FAP39_10305 | Not Available | Positive | 2080436 - 2081155 | 27021.7 |
| nad-dependent dna ligase liga | FAP39_10310 | Not Available | Positive | 2081224 - 2083347 | 77032.1 |
| atp-dependent dna helicase recg | FAP39_10315 | Not Available | Positive | 2083344 - 2085434 | 75517.3 |
| iron-sulfur cluster assembly scaffold protein | FAP39_10320 | Not Available | Negative | 2085878 - 2086330 | 15887.0 |
| phosphoribosyl-amp cyclohydrolase | FAP39_10325 | Not Available | Positive | 2086408 - 2086767 | 13445.9 |
| trna glutamyl-q(34) synthetase gluqrs | FAP39_10330 | Not Available | Negative | 2086796 - 2087635 | 30931.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
