Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome recycling factor | FAP39_10235 | Not Available | Positive | 2066906 - 2067472 | 21027.1 |
| isoprenyl transferase | FAP39_10240 | Not Available | Positive | 2067496 - 2068221 | 27538.9 |
| phosphatidate cytidylyltransferase | FAP39_10245 | Not Available | Positive | 2068218 - 2068994 | 26905.0 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | FAP39_10250 | Not Available | Positive | 2068994 - 2070163 | 41501.6 |
| rip metalloprotease rsep | FAP39_10255 | Not Available | Positive | 2070176 - 2071522 | 47503.4 |
| outer membrane protein assembly factor bama | FAP39_10260 | Not Available | Positive | 2071975 - 2074326 | 87191.2 |
| omph family outer membrane protein | FAP39_10265 | Not Available | Positive | 2074333 - 2074890 | 20466.6 |
| 3-hydroxyacyl-acp dehydratase fabz | FAP39_10270 | Not Available | Positive | 2074963 - 2075427 | 17153.2 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | FAP39_10275 | Not Available | Positive | 2075434 - 2076231 | 28226.1 |
| lpxi family protein | FAP39_10280 | Not Available | Positive | 2076235 - 2077038 | 28247.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
