Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate kinase | FAP39_10185 | Not Available | Positive | 2057976 - 2058524 | 20207.6 |
| 3-dehydroquinate synthase | FAP39_10190 | Not Available | Positive | 2058521 - 2059633 | 39366.6 |
| tryptophan synthase subunit beta | FAP39_10195 | Not Available | Positive | 2059797 - 2061005 | 43101.1 |
| single-stranded dna-binding protein | FAP39_10200 | Not Available | Negative | 2061126 - 2061653 | 18389.2 |
| lytic transglycosylase domain-containing protein | FAP39_10205 | Not Available | Positive | 2061858 - 2062445 | 21785.3 |
| c-type cytochrome | FAP39_10210 | Not Available | Positive | 2062586 - 2063743 | 42610.1 |
| antibiotic biosynthesis monooxygenase | FAP39_10215 | Not Available | Negative | 2063744 - 2064079 | 12386.5 |
| helix-turn-helix transcriptional regulator | FAP39_10220 | Not Available | Negative | 2064156 - 2064980 | 30667.9 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | FAP39_10225 | Not Available | Negative | 2065114 - 2065992 | 32337.9 |
| ump kinase | FAP39_10230 | Not Available | Positive | 2066112 - 2066843 | 26288.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
