Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine--trna ligase | FAP39_10135 | Not Available | Negative | 2046460 - 2047713 | 45933.1 |
| anhydro-n-acetylmuramic acid kinase | FAP39_10140 | Not Available | Positive | 2047776 - 2048888 | 38375.9 |
| cupin domain-containing protein | FAP39_10145 | Not Available | Negative | 2049028 - 2049465 | 15920.6 |
| alpha/beta hydrolase | FAP39_10150 | Not Available | Negative | 2049510 - 2050409 | 33332.0 |
| hypothetical protein | FAP39_10155 | Not Available | Negative | 2050504 - 2051259 | 27605.2 |
| phosphopyruvate hydratase | FAP39_10160 | Not Available | Negative | 2051352 - 2052626 | 45085.4 |
| dmt family transporter | FAP39_10165 | Not Available | Negative | 2052797 - 2053678 | 30888.5 |
| hlyc/corc family transporter | FAP39_10170 | Not Available | Negative | 2053850 - 2055196 | 48852.4 |
| site-specific tyrosine recombinase xerd | FAP39_10175 | Not Available | Negative | 2055244 - 2056185 | 34925.9 |
| hypothetical protein | FAP39_10180 | Not Available | Negative | 2056189 - 2057709 | 54116.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
