Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integration host factor subunit alpha | FAP39_10085 | Not Available | Negative | 2038276 - 2038578 | 11161.4 |
| ketoacyl-acp synthase iii | FAP39_10090 | Not Available | Negative | 2038704 - 2039678 | 34261.9 |
| phosphate acyltransferase plsx | FAP39_10095 | Not Available | Negative | 2039675 - 2040781 | 38854.7 |
| 50s ribosomal protein l32 | FAP39_10100 | Not Available | Negative | 2040803 - 2041009 | 7534.71 |
| duf177 domain-containing protein | FAP39_10105 | Not Available | Negative | 2041150 - 2041713 | 20578.3 |
| outer membrane protein assembly factor bame | FAP39_10110 | Not Available | Positive | 2041800 - 2042249 | 16541.0 |
| gnat family n-acetyltransferase | FAP39_10115 | Not Available | Positive | 2042325 - 2043062 | 27913.9 |
| atp-binding cassette domain-containing protein | FAP39_10120 | Not Available | Positive | 2043132 - 2044940 | 66322.3 |
| hypothetical protein | FAP39_10125 | Not Available | Negative | 2044948 - 2045553 | 22875.6 |
| sdr family nad(p)-dependent oxidoreductase | FAP39_10130 | Not Available | Negative | 2045553 - 2046308 | 25855.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
