Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine--trna ligase | FAP39_10030 | Not Available | Positive | 2028718 - 2030463 | 63785.0 |
| spor domain-containing protein | FAP39_10035 | Not Available | Positive | 2030502 - 2031545 | 35732.9 |
| beta-n-acetylhexosaminidase | FAP39_10040 | Not Available | Positive | 2031542 - 2032546 | 35781.0 |
| segregation/condensation protein a | FAP39_10045 | Not Available | Positive | 2032539 - 2033336 | 30235.4 |
| smc-scp complex subunit scpb | FAP39_10050 | Not Available | Positive | 2033329 - 2033988 | 24548.4 |
| hypothetical protein | FAP39_10055 | Not Available | Positive | 2034079 - 2034294 | 8022.77 |
| mfs transporter | FAP39_10060 | Not Available | Negative | 2034291 - 2035433 | 39347.2 |
| lrp/asnc family transcriptional regulator | FAP39_10065 | Not Available | Positive | 2035508 - 2036044 | 19437.2 |
| 2'-deoxycytidine 5'-triphosphate deaminase | FAP39_10070 | Not Available | Negative | 2036048 - 2037124 | 38852.4 |
| Trna-pro | Not Available | Not Available | Positive | 2037183 - 2037259 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
