Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_09980 | Not Available | Positive | 2019890 - 2020474 | 21382.5 |
| moxr family atpase | FAP39_09985 | Not Available | Negative | 2020505 - 2021344 | 31830.2 |
| rna polymerase-binding protein dksa | FAP39_09990 | Not Available | Positive | 2021529 - 2021951 | 16551.2 |
| fad-binding protein | FAP39_09995 | Not Available | Positive | 2022023 - 2023201 | 42642.4 |
| exodeoxyribonuclease iii | FAP39_10000 | Not Available | Negative | 2023230 - 2024009 | 29446.7 |
| hypothetical protein | FAP39_10005 | Not Available | Positive | 2024436 - 2024999 | 18844.0 |
| hypothetical protein | FAP39_10010 | Not Available | Positive | 2025062 - 2026138 | 40791.5 |
| dmt family transporter | FAP39_10015 | Not Available | Positive | 2026138 - 2027082 | 34168.3 |
| iron-sulfur cluster assembly accessory protein | FAP39_10020 | Not Available | Negative | 2027092 - 2027415 | 11233.3 |
| deoxyguanosinetriphosphate triphosphohydrolase | FAP39_10025 | Not Available | Positive | 2027513 - 2028658 | 42258.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
