Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine-synthetase adenylyltransferase | FAP39_09930 | Not Available | Positive | 2008737 - 2011517 | 101320.0 |
| hypothetical protein | FAP39_09935 | Not Available | Positive | 2011517 - 2011786 | 10501.4 |
| hypothetical protein | FAP39_09940 | Not Available | Positive | 2011926 - 2012585 | 23937.2 |
| class i sam-dependent rrna methyltransferase | FAP39_09945 | Not Available | Positive | 2012623 - 2013819 | 42416.7 |
| pin domain-containing protein | FAP39_09950 | Not Available | Positive | 2013846 - 2014358 | 18813.6 |
| peptidase m48 | FAP39_09955 | Not Available | Negative | 2014409 - 2015101 | 25172.7 |
| aminopeptidase p family protein | FAP39_09960 | Not Available | Negative | 2015150 - 2016298 | 42008.1 |
| vwa domain-containing protein | FAP39_09965 | Not Available | Negative | 2016448 - 2017632 | 45723.3 |
| duf2927 domain-containing protein | FAP39_09970 | Not Available | Negative | 2017810 - 2019171 | 49887.9 |
| gnat family n-acetyltransferase | FAP39_09975 | Not Available | Negative | 2019171 - 2019626 | 17349.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
