Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | FAP39_09880 | Not Available | Negative | 1993633 - 1994883 | 44448.0 |
| abc transporter atp-binding protein | FAP39_09885 | Not Available | Negative | 1994880 - 1995575 | 24742.1 |
| duf2796 domain-containing protein | FAP39_09890 | Not Available | Negative | 1995582 - 1996244 | 23515.5 |
| transcriptional repressor | FAP39_09895 | Not Available | Negative | 1996276 - 1996662 | 14050.9 |
| efflux rnd transporter permease subunit | FAP39_09900 | Not Available | Negative | 1996885 - 1999983 | 110765.0 |
| hlyd family efflux transporter periplasmic adaptor subunit | FAP39_09905 | Not Available | Negative | 1999985 - 2001325 | 48053.1 |
| trimeric intracellular cation channel family protein | FAP39_09910 | Not Available | Positive | 2001922 - 2002539 | 21212.7 |
| hypothetical protein | FAP39_09915 | Not Available | Negative | 2002637 - 2004151 | 55832.9 |
| hypothetical protein | FAP39_09920 | Not Available | Negative | 2004154 - 2007657 | 127976.0 |
| hypothetical protein | FAP39_09925 | Not Available | Negative | 2007724 - 2008464 | 27378.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
