Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4365 domain-containing protein | FAP39_09830 | Not Available | Positive | 1987557 - 1988030 | 18486.1 |
| hypothetical protein | FAP39_09835 | Not Available | Positive | 1988049 - 1988681 | 22564.7 |
| acyl-coa transferase | FAP39_09840 | Not Available | Positive | 1988678 - 1989094 | 14545.3 |
| polymer-forming cytoskeletal protein | FAP39_09845 | Not Available | Negative | 1989477 - 1989839 | 12412.5 |
| hypothetical protein | FAP39_09850 | Not Available | Positive | 1989932 - 1990873 | 33164.3 |
| hypothetical protein | FAP39_09855 | Not Available | Positive | 1990873 - 1991176 | 11190.4 |
| transglutaminase family protein | FAP39_09860 | Not Available | Positive | 1991177 - 1991822 | 23576.5 |
| cation transporter | FAP39_09865 | Not Available | Positive | 1991822 - 1992457 | 22698.7 |
| hypothetical protein | FAP39_09870 | Not Available | Positive | 1992780 - 1992992 | 7709.34 |
| duf3299 domain-containing protein | FAP39_09875 | Not Available | Negative | 1993110 - 1993610 | 18417.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
